{
  "_id": "6acf347ad9de2f3f33fc918c",
  "Package": "repvar",
  "Type": "Package",
  "Title": "Extract Samples to Represent All Variables",
  "Version": "0.1.1",
  "BugReports": "https://github.com/zkamvar/repvar/issues",
  "Authors@R": "c(person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = c(\"cre\", \"aut\"),\nemail = \"zkamvar@gmail.com\", comment = c(ORCID = \"0000-0003-1458-7108\")),\nperson(c(\"Sydney\", \"E.\"), \"Everhart\", role = c(\"ctb\", \"dtc\"),\nemail = \"everhart@unl.edu\", comment = c(ORCID = \"0000-0002-5773-1280\")))",
  "Maintainer": "Zhian N. Kamvar <zkamvar@gmail.com>",
  "Description": "In population genetics, it's not uncommon to re-genotype\nsets of samples to use as positive controls in future studies\nor for diagnostic panels. To save cost, it's often desireable\nto have the minimum number of samples that represent all of the\nalleles in the data. This package provides a procedure that\nwill select these samples with alternative options. The name\n'repvar' stands for 'REPresent VARiables'.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://zkamvar.r-universe.dev",
  "Date/Publication": "2025-01-06 19:25:46 UTC",
  "RemoteUrl": "https://github.com/zkamvar/repvar",
  "RemoteRef": "HEAD",
  "RemoteSha": "31180e285d154b5c28534123b171cbbbeebfbce2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-14 07:40:50 UTC",
    "User": "root"
  },
  "Author": "Zhian N. Kamvar [cre, aut] (ORCID:\n<https://orcid.org/0000-0003-1458-7108>),\nSydney E. Everhart [ctb, dtc] (ORCID:\n<https://orcid.org/0000-0002-5773-1280>)",
  "_user": "zkamvar",
  "_type": "src",
  "_file": "repvar_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/4aa8a3dc896407c146527994d75d116b22a0b0ab8097839be11832e65262e704",
  "_filesize": 840263,
  "_sha256": "4aa8a3dc896407c146527994d75d116b22a0b0ab8097839be11832e65262e704",
  "_expires": "2027-01-22T07:51:20.000Z",
  "_created": "2026-10-14T07:40:50.000Z",
  "_published": "2026-10-14T07:51:22.332Z",
  "_buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115739112951,
      "time": 118,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11877811491"
    },
    {
      "job": 115739113092,
      "time": 101,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11876964403"
    },
    {
      "job": 115739112977,
      "time": 77,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11878475436"
    },
    {
      "job": 115739112985,
      "time": 94,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11877636029"
    },
    {
      "job": 115738225182,
      "time": 144,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11878045299"
    },
    {
      "job": 115739113202,
      "time": 81,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11877845675"
    },
    {
      "job": 115739113124,
      "time": 83,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11877496513"
    },
    {
      "job": 115739113102,
      "time": 55,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11877595977"
    },
    {
      "job": 115739113081,
      "time": 56,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11878060477"
    }
  ],
  "_upstream": "https://github.com/zkamvar/repvar",
  "_commit": {
    "id": "31180e285d154b5c28534123b171cbbbeebfbce2",
    "author": "Zhian N. Kamvar <zkamvar@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update NEWS.md",
    "time": 1736191546
  },
  "_maintainer": {
    "name": "Zhian N. Kamvar",
    "email": "zkamvar@gmail.com",
    "login": "zkamvar",
    "mastodon": "@zkamvar@hachyderm.io",
    "linkedin": "in/zkamvar",
    "orcid": "0000-0003-1458-7108",
    "description": "Research Software Engineer | Interested in education, pop genetics, evolution, bioinformatics, and R programming",
    "uuid": 3639446
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "purrr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "zkamvar",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "alleles",
    "genetics",
    "microsatellite"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "zkamvar",
      "count": 38,
      "uuid": 3639446
    }
  ],
  "_userbio": {
    "uuid": 3639446,
    "type": "user",
    "name": "Zhian N. Kamvar",
    "followers": 241,
    "description": "Research Software Engineer | Interested in education, pop genetics, evolution, bioinformatics, and R programming"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/repvar"
  },
  "_devurl": "https://github.com/zkamvar/repvar",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/repvar.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "rpv_find",
    "rpv_image",
    "rpv_indices",
    "rpv_stats"
  ],
  "_datasets": [
    {
      "name": "monilinia",
      "title": "Peach brown rot pathogen _Monilinia fructicola_",
      "object": "monilinia",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "CHMFc4.224",
        "CHMFc4.231",
        "CHMFc4.238",
        "CHMFc5.85",
        "CHMFc5.97",
        "CHMFc5.111",
        "CHMFc5.105",
        "CHMFc5.107",
        "CHMFc5.113",
        "CHMFc12.163",
        "CHMFc12.159",
        "CHMFc12.169",
        "SEA.132",
        "SEA.156",
        "SEA.160",
        "SEA.128",
        "SEA.136",
        "SEA.152",
        "SEA.144",
        "SEA.140",
        "SEA.164",
        "SEA.176",
        "SEA.148",
        "SED.133",
        "SED.129",
        "SED.145",
        "SED.109",
        "SED.137",
        "SED.141",
        "SED.149",
        "SED.125",
        "SED.187",
        "SEE.156",
        "SEE.148",
        "SEE.160",
        "SEE.152",
        "SEE.164",
        "SEG.144",
        "SEG.126",
        "SEG.138",
        "SEG.120",
        "SEG.154",
        "SEG.149",
        "SEG.132",
        "SEG.159",
        "SEI.116",
        "SEI.113",
        "SEI.119",
        "SEI.122",
        "SEI.110",
        "SEI.103",
        "SEI.100",
        "SEL.143",
        "SEL.147",
        "SEL.139",
        "SEL.151",
        "SEL.135",
        "SEN.227",
        "SEN.231",
        "SEN.235",
        "SEN.223",
        "SEN.219",
        "SEN.273",
        "SEN.256",
        "SEN.215",
        "SEN.248",
        "SEP.257",
        "SEP.261",
        "SEP.273",
        "SEP.237",
        "SEP.265",
        "SEP.247",
        "SEP.245",
        "SEP.254",
        "SEQ.142",
        "SEQ.136",
        "SEQ.134",
        "SEQ.138",
        "SEQ.152",
        "SEQ.140",
        "SEQ.132",
        "SEQ.154",
        "SEQ.146",
        "SEQ.144",
        "SEQ.130",
        "SER.145",
        "SER.153",
        "SER.149",
        "SER.141",
        "SER.137",
        "SER.157",
        "SER.165",
        "SER.133",
        "SER.182",
        "SER.147"
      ],
      "rows": 264,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "monilinia",
      "title": "Peach brown rot pathogen _Monilinia fructicola_",
      "topics": [
        "monilinia"
      ]
    },
    {
      "page": "repvar",
      "title": "repvar.",
      "topics": [
        "repvar-package",
        "repvar"
      ]
    },
    {
      "page": "rpv_find",
      "title": "Iteratively find minimum set of samples by shuffling rows",
      "topics": [
        "rpv_find"
      ]
    },
    {
      "page": "rpv_image",
      "title": "Create an image of the data matrix",
      "topics": [
        "rpv_image"
      ]
    },
    {
      "page": "rpv_indices",
      "title": "Get minimum set of individual indices to represent all alleles in a population",
      "topics": [
        "rpv_indices"
      ]
    },
    {
      "page": "rpv_stats",
      "title": "Calculate Entropy Statistics",
      "topics": [
        "rpv_stats"
      ]
    }
  ],
  "_readme": "https://github.com/zkamvar/repvar/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting Started",
      "author": "Zhian N. Kamvar and Sydney E. Everhart",
      "engine": "knitr::rmarkdown",
      "headings": [
        "What the repvar package does",
        "How it works",
        "Functions in this package",
        "Quickstart",
        "Detailed Example: Monilinia fructicola"
      ],
      "created": "2018-04-04 20:33:29",
      "modified": "2018-04-05 22:15:37",
      "commits": 5
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "repvar",
  "_universes": [
    "zkamvar"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-14T07:42:44.000Z",
      "distro": "resolute",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/ee11f88ce36fa4c291b5efc618343a39534bba8153b32d8033f584ad257e445b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-14T07:42:34.000Z",
      "distro": "resolute",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/492dbdacc263f00938bd0c1b4452395491912103a30dc61d7b5611dea052b69e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-14T07:50:51.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/4c7ab70cb1f1ae24d62d67886b3b311eaea8e8d9ded01e93b60f84f6b7dbca0b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-14T07:42:43.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/2b70e1282b47ef34abd77d041e8178c1f5c9c3274927f1719582c187fc876c8e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-10-14T07:42:25.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/ad6d77bc8022f89afd81ec0e9be726f7330a184cd69185fd7fbd17bad454ecac",
      "status": "success",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-14T07:42:07.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/97b8a141599de38c7f4949ed8fcb235b7dcd607f690960989a8925bd9fbf7f3e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-14T07:41:47.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/b1b0f0fe3218fb9274336e8903f61f67ac9b2f9d3f8c64d588a5f3b508abfd07",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-14T07:41:46.000Z",
      "commit": "31180e285d154b5c28534123b171cbbbeebfbce2",
      "fileid": "https://r2.ropensci.org/9ce8190485875a8959fb7e76a9996301648bdec60d86ef0b83d7e9c936397044",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/zkamvar/actions/runs/38529611396"
    }
  ]
}