Package: epikit 0.1.4

Alexander Spina

epikit: Miscellaneous helper tools for epidemiologists

Contains tools for formatting inline code, renaming redundant columns, aggregating age categories, adding survey weights, finding the earliest date of an event, plotting z-curves, generating population counts and calculating proportions with confidence intervals. This is part of the 'R4Epis' project <https://r4epis.netlify.com>.

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Dirk Schumacher [aut], Kate Doyle [ctb]

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epikit.pdf |epikit.html✨
epikit/json (API)
NEWS

# Install 'epikit' in R:

install.packages('epikit', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r4epi/epikit/issues

On CRAN:

25 exports 9 stars 1.95 score 49 dependencies 2 dependents 925 downloads

Last updated 1 years agofrom:6a1fd65996

Exports:add_weights_cluster add_weights_strata age_categories assert_positive_timespan augment_redundant constrain_dates dots_to_charlist fac_from_num find_breaks find_date_cause find_end_date find_start_date fmt_ci fmt_ci_df fmt_count fmt_pci fmt_pci_df gen_polygon gen_population group_age_categories merge_ci_df merge_pci_df rename_redundant unite_ci zcurve

Dependencies:binom class classInt cli colorspace cpp11 DBI dplyr e1071 fansi farver forcats generics ggplot2 glue gtable isoband KernSmooth labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig proxy purrr R6 RColorBrewer Rcpp rlang s2 scales sf stringi stringr tibble tidyr tidyselect units utf8 vctrs viridisLite withr wk

Introduction to epikit

Rendered fromintro.Rmdusingknitr::rmarkdownon Jul 01 2024.

Last update: 2020-01-28
Started: 2020-01-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add a column of cluster survey weights to a data frame.	add_weights_cluster
Add a column of stratified survey weights to a data frame. For use in surveys where you took a sample population out of a larger source population, with a simple-random or stratified survey design.	add_weights_strata
Create an age group variable	age_categories group_age_categories
create factors from numbers	fac_from_num
Automatically calculate breaks for a number	find_breaks
Find the first date beyond a cutoff in several columns	assert_positive_timespan constrain_dates find_date_cause find_end_date find_start_date
Helper to format confidence interval for text	fmt_ci fmt_ci_df fmt_pci fmt_pci_df
Counts and proportions inline	fmt_count
Fake spatial data as polygons This function returns a polygon which is split in to regions based on a supplied vector of names	gen_polygon
Generate population counts from estimated population age breakdowns.	gen_population
Cosmetically relabel all columns that contains a certain pattern	augment_redundant rename_redundant
Unite estimates and confidence intervals	merge_ci_df merge_pci_df unite_ci
Create a curve comparing observed Z-scores to the WHO standard.	zcurve