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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "incidence" in publications use:'
type: software
license: MIT
title: 'incidence: Compute, Handle, Plot and Model Incidence of Dated Events'
version: 1.7.5
identifiers:
- type: doi
  value: 10.32614/CRAN.package.incidence
abstract: Provides functions and classes to compute, handle and visualise incidence
  from dated events for a defined time interval. Dates can be provided in various
  standard formats. The class 'incidence' is used to store computed incidence and
  can be easily manipulated, subsetted, and plotted. In addition, log-linear models
  can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON
  (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
authors:
- family-names: Jombart
  given-names: Thibaut
  email: thibautjombart@gmail.com
- family-names: Kamvar
  given-names: Zhian N.
  email: zkamvar@gmail.com
  orcid: https://orcid.org/0000-0003-1458-7108
- family-names: FitzJohn
  given-names: Rich
  email: rich.fitzjohn@gmail.com
- family-names: Taylor
  given-names: Tim
  email: tim.taylor@hiddenelephants.co.uk
  orcid: https://orcid.org/0000-0002-8587-7113
preferred-citation:
  type: article
  title: 'Epidemic curves made easy using the R package incidence [version 1; referees:
    awaiting peer review]'
  authors:
  - family-names: Kamvar
    given-names: Zhian N.
    email: zkamvar@gmail.com
    orcid: https://orcid.org/0000-0003-1458-7108
  - family-names: Cai
    given-names: Jun
  - family-names: Pulliam
    given-names: Juliet R.C.
  - family-names: Schumacher
    given-names: Jakob
  - family-names: Jombart
    given-names: Thibaut
    email: thibautjombart@gmail.com
  journal: F1000Research
  year: '2019'
  volume: '8'
  issue: '139'
  url: https://doi.org/10.12688/f1000research.18002.1
repository: https://zkamvar.r-universe.dev
repository-code: https://github.com/reconhub/incidence
commit: 42212a2ce0a63ada19d1d4d471bd93055d1a8876
url: https://www.repidemicsconsortium.org/incidence/
contact:
- family-names: Taylor
  given-names: Tim
  email: tim.taylor@hiddenelephants.co.uk
  orcid: https://orcid.org/0000-0002-8587-7113
references:
- type: manual
  title: 'incidence: Compute, Handle, Plot and Model Incidence of Dated Events'
  authors:
  - family-names: Jombart
    given-names: Thibaut
  - family-names: Kamvar
    given-names: Zhian N.
  - family-names: FitzJohn
    given-names: Rich
  - family-names: Cai
    given-names: Jun
  - family-names: Bhatia
    given-names: Sangeeta
  - family-names: Schumacher
    given-names: Jakob
  - family-names: Pulliam
    given-names: Juliet R.C.
  notes: R package version 1.7.5
  url: https://doi.org/10.5281/zenodo.2584018