Package: poppr
Type: Package
Title: Genetic Analysis of Populations with Mixed Reproduction
Version: 2.9.8
Authors@R: c(person(c("Zhian", "N."), "Kamvar", role = c("cre", "aut"),
    email = "zkamvar@gmail.com", comment = c(ORCID = "0000-0003-1458-7108")),
    person(c("Javier", "F."), "Tabima", role = "aut",
    email = "tabimaj@onid.orst.edu", comment = c(ORCID = "0000-0002-3603-2691")),
    person(c("Sydney", "E."), "Everhart", role = c("ctb", "dtc"),
    email = "everhart@unl.edu", comment = c(ORCID = "0000-0002-5773-1280")),
    person(c("Jonah", "C."), "Brooks", role = "aut",
    email = "brookjon@onid.orst.edu"),
    person(c("Stacy", "A."), "Krueger-Hadfield", role = "ctb",
    email = "kruegersa@cofc.edu", comment = c(ORCID = "0000-0002-7324-7448")),
    person(c("Erik"), "Sotka", role = "ctb",
    email = "sotkae@cofc.edu"),
    person(c("Brian", "J."), "Knaus", role = "ctb",
    email = "briank.lists@gmail.com", comment = c(ORCID = "0000-0003-1665-4343")),
    person(c("Patrick", "G."), "Meirmans", role = "ctb",
    email = "p.g.meirmans@uva.nl", comment = c(ORCID = "0000-0002-6395-8107")),
    person(c("Frédéric", "D."), "Chevalier", role = "ctb",
    email = "fcheval@txbiomed.org", comment = c(ORCID = "0000-0003-2611-8106")),
    person("David", "Folarin", role = "aut",
    email = "dof5@cornell.edu"),
    person(c("Niklaus", "J."), "Grünwald", role = "ths",
    email = "grunwaln@science.oregonstate.edu", comment = c(ORCID = "0000-0003-1656-7602")))
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Encoding: UTF-8
URL: https://grunwaldlab.github.io/poppr/,
        https://github.com/grunwaldlab/poppr/,
        https://grunwaldlab.github.io/Population_Genetics_in_R/
Description: Population genetic analyses for hierarchical analysis of
        partially clonal populations built upon the architecture of the
        'adegenet' package. Originally described in Kamvar, Tabima, and
        Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0
        described in Kamvar, Brooks, and Grünwald (2015)
        <doi:10.3389/fgene.2015.00208>.
MailingList: https://groups.google.com/d/forum/poppr
BugReports: https://github.com/grunwaldlab/poppr/issues/
Depends: R (>= 2.15.1), adegenet (>= 2.0.0)
Imports: stats, graphics, grDevices, utils, vegan, ggplot2, ape (>=
        3.1-1), igraph (>= 1.0.0), methods, ade4, pegas, polysat, dplyr
        (>= 0.4), rlang, boot, shiny, magrittr, progressr
Suggests: testthat, knitr, rmarkdown, poweRlaw, cowplot
Config/Needs/check: dbailleul/RClone
License: GPL-2 | GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.3.2.9000
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev zlib1g-dev
Repository: https://zkamvar.r-universe.dev
Date/Publication: 2025-09-10 23:00:52 UTC
RemoteUrl: https://github.com/grunwaldlab/poppr
RemoteRef: HEAD
RemoteSha: 08eb52554f36878e08ca8e446ae61dff49174605
NeedsCompilation: yes
Packaged: 2026-06-24 02:44:29 UTC; root
Author: Zhian N. Kamvar [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-1458-7108>),
  Javier F. Tabima [aut] (ORCID: <https://orcid.org/0000-0002-3603-2691>),
  Sydney E. Everhart [ctb, dtc] (ORCID:
    <https://orcid.org/0000-0002-5773-1280>),
  Jonah C. Brooks [aut],
  Stacy A. Krueger-Hadfield [ctb] (ORCID:
    <https://orcid.org/0000-0002-7324-7448>),
  Erik Sotka [ctb],
  Brian J. Knaus [ctb] (ORCID: <https://orcid.org/0000-0003-1665-4343>),
  Patrick G. Meirmans [ctb] (ORCID:
    <https://orcid.org/0000-0002-6395-8107>),
  Frédéric D. Chevalier [ctb] (ORCID:
    <https://orcid.org/0000-0003-2611-8106>),
  David Folarin [aut],
  Niklaus J. Grünwald [ths] (ORCID:
    <https://orcid.org/0000-0003-1656-7602>)