# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "poppr" in publications use:'
type: software
license:
- GPL-2.0-only
- GPL-3.0-only
title: 'poppr: Genetic Analysis of Populations with Mixed Reproduction'
version: 2.9.6
doi: 10.7717/peerj.281
identifiers:
- type: doi
  value: 10.32614/CRAN.package.poppr
- type: url
  value: https://github.com/grunwaldlab/poppr/
- type: url
  value: https://grunwaldlab.github.io/Population_Genetics_in_R/
abstract: Population genetic analyses for hierarchical analysis of partially clonal
  populations built upon the architecture of the 'adegenet' package. Originally described
  in Kamvar, Tabima, and Grünwald (2014) <https://doi.org/10.7717/peerj.281> with
  version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <https://doi.org/10.3389/fgene.2015.00208>.
authors:
- family-names: Kamvar
  given-names: Zhian N.
  email: zkamvar@gmail.com
  orcid: https://orcid.org/0000-0003-1458-7108
- family-names: Tabima
  given-names: Javier F.
  email: tabimaj@onid.orst.edu
  orcid: https://orcid.org/0000-0002-3603-2691
- family-names: Brooks
  given-names: Jonah C.
  email: brookjon@onid.orst.edu
- family-names: Folarin
  given-names: David
  email: dof5@cornell.edu
preferred-citation:
  type: article
  title: '\textitPoppr: an R package for genetic analysis of populations with clonal,
    partially clonal, and/or sexual reproduction.'
  authors:
  - family-names: Kamvar
    given-names: Zhian N.
    email: zkamvar@gmail.com
    orcid: https://orcid.org/0000-0003-1458-7108
  - family-names: Tabima
    given-names: Javier F.
    email: tabimaj@onid.orst.edu
    orcid: https://orcid.org/0000-0002-3603-2691
  - family-names: Grünwald
    given-names: Niklaus J.
  year: '2014'
  month: '3'
  volume: '2'
  keywords:
  - population genetics
  - clonality
  - genotypic diversity
  - index of association
  - Bruvo's distance
  - clone correction
  - minimum spanning networks
  - hierarchy
  - bootstrap
  - permutation
  issn: 2167-8359
  url: https://doi.org/10.7717/peerj.281
  doi: 10.7717/peerj.281
  journal: PeerJ
  start: e281
repository: https://zkamvar.r-universe.dev
repository-code: https://github.com/grunwaldlab/poppr/issues/
commit: aa90f4f4e2ee77eb3704949ec2d435f497cc2fd3
url: https://grunwaldlab.github.io/poppr/
contact:
- family-names: Kamvar
  given-names: Zhian N.
  email: zkamvar@gmail.com
  orcid: https://orcid.org/0000-0003-1458-7108
references:
- type: article
  title: Novel R tools for analysis of genome-wide population genetic data with emphasis
    on clonality
  authors:
  - family-names: Kamvar
    given-names: Zhian N.
  - family-names: Brooks
    given-names: Jonah C.
  - family-names: Grünwald
    given-names: Niklaus J.
  year: '2015'
  month: '6'
  volume: '6'
  keywords:
  - clonality
  - population genomics
  - bootstrap
  - index of association
  - hierarchical analysis
  - sliding window
  url: https://doi.org/10.3389/fgene.2015.00208
  doi: 10.3389/fgene.2015.00208
  journal: Front. Genet.
  start: '208'