Package: sitrep 0.2.3

Alexander Spina

sitrep: Report templates and helper functions for applied epidemiology

Report templates and helper functions for applied epidemiology

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Dirk Schumacher [aut], Kate Doyle [aut], Chris Jarvis [aut], Lukas Richter [aut], Annick Lenglet [cph], Neale Batra [ctb]

sitrep_0.2.3.tar.gz
sitrep_0.2.3.zip(r-4.5)sitrep_0.2.3.zip(r-4.4)sitrep_0.2.3.zip(r-4.3)
sitrep_0.2.3.tgz(r-4.4-any)sitrep_0.2.3.tgz(r-4.3-any)
sitrep_0.2.3.tar.gz(r-4.5-noble)sitrep_0.2.3.tar.gz(r-4.4-noble)
sitrep_0.2.3.tgz(r-4.4-emscripten)sitrep_0.2.3.tgz(r-4.3-emscripten)
sitrep.pdf |sitrep.html
sitrep/json (API)
NEWS

# Install sitrep in R:
install.packages('sitrep', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/r4epi/sitrep/issues

Datasets:
  • AJS_linelist_internal - Example outbreak data for Hepatatis E virus or Acute Jaundice Syndrome
  • AJS_pop_internal - Example population data for Hepatatis E virus or Acute Jaundice Syndrome
  • shape_block_internal - Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome
  • shape_quartier_internal - Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome

On CRAN:

epidemiologymsfoutbreaksreport-generator

52 exports 39 stars 2.76 score 170 dependencies

Last updated 1 years agofrom:b96906b87b3bb4f4d9f8b1112ad723a286c9e6c6

Exports:add_aradd_cfradd_crosstabsadd_mradd_weights_clusteradd_weights_strataage_categoriesage_pyramidassert_positive_timespanattack_rateaugment_redundantavailable_sitrep_templatescase_fatality_ratecase_fatality_rate_dfcheck_sitrep_templatesconstrain_datesdata_frame_from_2x2dots_to_charlistdownload_kobodownload_outbreak_linelistdownload_outbreak_popdownload_shape_blockdownload_shape_quartierdownload_surveyfac_from_numfind_breaksfind_date_causefind_end_datefind_start_datefmt_cifmt_ci_dffmt_countfmt_pcifmt_pci_dfgen_datagen_polygongen_populationgroup_age_categoriesgt_mh_oddsgt_remove_statmerge_ci_dfmerge_pci_dfmortality_ratemsf_dictmsf_dict_rename_helpermsf_dict_surveyrename_redundanttab_linelisttab_surveytab_univariateunite_cizcurve

Dependencies:abindanthroanytimeapyramidaskpassbackportsbase64encBHbigDbinombitbit64bitopsbroombroom.helpersbslibcachemcellrangerclassclassIntclicliprcolorspacecommonmarkcpp11crayoncrulcurldata.tableDBIdigestdplyre1071ellipsisepidictepikitepitabulateevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeignfsgdtoolsgenericsgfontsggalluvialggplot2ggspatialgluegtgtablegtsummaryhavenherehighrhmshtmltoolshtmlwidgetshttpcodehttpuvisobandjanitorjpegjquerylibjsonlitejuicyjuiceKernSmoothknitrlabelinglabelledlaterlatticelazyevallifecyclelubridatemagrittrmarkdownMASSmatchmakerMatrixmemoisemgcvmimeminqamitoolsmunsellnlmenumDerivofficeropensslpacmanparsedatepatchworkpillarpkgconfigpngprettyunitsprogresspromisesproxypurrrR.methodsS3R.ooR.utilsR6raggrappdirsRColorBrewerRcppRcppArmadilloreactablereactRreadrreadxlrematchremotesriorlangrmarkdownrosmrprojrootrstudioapis2sassscalessfshinyslidersnakecasesourcetoolssrvyrstringistringrsurveysurvivalsyssystemfontstextshapingtibbletidyrtidyselecttimechangetinytextriebeardtsibbletzdbunitsurltoolsutf8uuidV8vctrsviridisLitevroomwarpwithrwkwritexlxfunxml2xtableyamlzip