Package: sitrep 0.2.3
sitrep: Report templates and helper functions for applied epidemiology
Report templates and helper functions for applied epidemiology
Authors:
sitrep_0.2.3.tar.gz
sitrep_0.2.3.zip(r-4.5)sitrep_0.2.3.zip(r-4.4)sitrep_0.2.3.zip(r-4.3)
sitrep_0.2.3.tgz(r-4.4-any)sitrep_0.2.3.tgz(r-4.3-any)
sitrep_0.2.3.tar.gz(r-4.5-noble)sitrep_0.2.3.tar.gz(r-4.4-noble)
sitrep_0.2.3.tgz(r-4.4-emscripten)sitrep_0.2.3.tgz(r-4.3-emscripten)
sitrep.pdf |sitrep.html✨
sitrep/json (API)
NEWS
# Install 'sitrep' in R: |
install.packages('sitrep', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/r4epi/sitrep/issues
Pkgdown:https://r4epi.github.io
- AJS_linelist_internal - Example outbreak data for Hepatatis E virus or Acute Jaundice Syndrome
- AJS_pop_internal - Example population data for Hepatatis E virus or Acute Jaundice Syndrome
- shape_block_internal - Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome
- shape_quartier_internal - Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome
epidemiologymsfoutbreaksreport-generator
Last updated 2 years agofrom:b96906b87b. Checks:OK: 1 WARNING: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 24 2024 |
R-4.5-win | WARNING | Nov 24 2024 |
R-4.5-linux | WARNING | Nov 24 2024 |
R-4.4-win | WARNING | Nov 24 2024 |
R-4.4-mac | WARNING | Nov 24 2024 |
R-4.3-win | WARNING | Nov 24 2024 |
R-4.3-mac | WARNING | Nov 24 2024 |
Exports:add_aradd_cfradd_crosstabsadd_mradd_weights_clusteradd_weights_strataage_categoriesage_pyramidassert_positive_timespanattack_rateaugment_redundantavailable_sitrep_templatescase_fatality_ratecase_fatality_rate_dfcheck_sitrep_templatesconstrain_datesdata_frame_from_2x2dots_to_charlistdownload_kobodownload_outbreak_linelistdownload_outbreak_popdownload_shape_blockdownload_shape_quartierdownload_surveyfac_from_numfind_breaksfind_date_causefind_end_datefind_start_datefmt_cifmt_ci_dffmt_countfmt_pcifmt_pci_dfgen_datagen_polygongen_populationgroup_age_categoriesgt_mh_oddsgt_remove_statmerge_ci_dfmerge_pci_dfmortality_ratemsf_dictmsf_dict_rename_helpermsf_dict_surveyrename_redundanttab_linelisttab_surveytab_univariateunite_cizcurve
Dependencies:abindanthroanytimeapyramidaskpassbackportsbase64encBHbigDbinombitbit64bitopsbroombslibcachemcardscellrangerclassclassIntclicliprcolorspacecommonmarkcpp11crayoncurldata.tableDBIdigestdplyre1071ellipsisepidictepikitepitabulateevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeignfsgdtoolsgenericsggalluvialggplot2ggspatialgluegtgtablegtsummaryhavenherehighrhmshtmltoolshtmlwidgetsisobandjanitorjpegjquerylibjsonlitejuicyjuiceKernSmoothknitrlabelinglabelledlatticelazyevallifecyclelubridatemagrittrmarkdownMASSmatchmakerMatrixmemoisemgcvmimeminqamitoolsmunsellnlmenumDerivofficeropensslpacmanparsedatepatchworkpillarpkgconfigpngprettyunitsprogressproxypurrrR.methodsS3R.ooR.utilsR6raggrappdirsRColorBrewerRcppRcppArmadilloreactablereactRreadrreadxlrematchremotesriorlangrmarkdownrosmrprojrootrstudioapis2sassscalessfslidersnakecasesrvyrstringistringrsurveysurvivalsyssystemfontstextshapingtibbletidyrtidyselecttimechangetinytextsibbletzdbunitsutf8uuidV8vctrsviridisLitevroomwarpwithrwkwritexlxfunxml2yamlzip
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Functions re-exported from apyramid | age_pyramid |
Example outbreak data for Hepatatis E virus or Acute Jaundice Syndrome (AJS) | AJS_linelist_internal |
Example population data for Hepatatis E virus or Acute Jaundice Syndrome (AJS) | AJS_pop_internal |
Display the available sitrep templates | available_sitrep_templates |
Access kobo data dictionary | download_kobo |
Access AJS outbreak linelist | download_outbreak_linelist |
Access AJS outbreak population data | download_outbreak_pop |
Access Am Timan blocks shapefile | download_shape_block |
Access Am Timan quartier shapefile | download_shape_quartier |
Access fake mortality survey data | download_survey |
Internal function (not exported - i.e. not userfacing) to reduce code duplication | generic_download |
Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome (AJS) | shape_block_internal |
Quartier shapefile for example outbreak Hepatatis E virus or Acute Jaundice Syndrome (AJS) | shape_quartier_internal |