Package: sitrep 0.2.3

Alexander Spina

sitrep: Report templates and helper functions for applied epidemiology

Report templates and helper functions for applied epidemiology.

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Dirk Schumacher [aut], Kate Doyle [aut], Chris Jarvis [aut], Lukas Richter [aut], Annick Lenglet [cph], Neale Batra [ctb]

sitrep_0.2.3.tar.gz
sitrep_0.2.3.zip(r-4.5)sitrep_0.2.3.zip(r-4.4)sitrep_0.2.3.zip(r-4.3)
sitrep_0.2.3.tgz(r-4.5-any)sitrep_0.2.3.tgz(r-4.4-any)sitrep_0.2.3.tgz(r-4.3-any)
sitrep_0.2.3.tar.gz(r-4.5-noble)sitrep_0.2.3.tar.gz(r-4.4-noble)
sitrep_0.2.3.tgz(r-4.3-emscripten)
sitrep.pdf |sitrep.html✨
sitrep/json (API)
NEWS

# Install 'sitrep' in R:
install.packages('sitrep', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r4epi/sitrep/issues

Pkgdown site:https://r4epi.github.io

On CRAN:

epidemiologymsfoutbreaksreport-generator

4.09 score 41 stars 9 scripts 46 exports 158 dependencies

Last updated 18 days agofrom:da6303af91. Checks:1 OK, 7 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 04 2025
R-4.5-winWARNINGFeb 04 2025
R-4.5-macWARNINGFeb 04 2025
R-4.5-linuxWARNINGFeb 04 2025
R-4.4-winWARNINGFeb 04 2025
R-4.4-macWARNINGFeb 04 2025
R-4.3-winWARNINGFeb 04 2025
R-4.3-macWARNINGFeb 04 2025

Exports:add_aradd_cfradd_crosstabsadd_mradd_weights_clusteradd_weights_strataage_categoriesage_pyramidassert_positive_timespanattack_rateaugment_redundantavailable_sitrep_templatescase_fatality_ratecase_fatality_rate_dfcheck_sitrep_templatesconstrain_datesdata_frame_from_2x2dots_to_charlistfac_from_numfind_breaksfind_date_causefind_end_datefind_start_datefmt_cifmt_ci_dffmt_countfmt_pcifmt_pci_dfgen_datagen_polygongen_populationgroup_age_categoriesgt_mh_oddsgt_remove_statmerge_ci_dfmerge_pci_dfmortality_ratemsf_dictmsf_dict_rename_helpermsf_dict_surveyrename_redundanttab_linelisttab_surveytab_univariateunite_cizcurve

Dependencies:abindanthroanytimeapyramidaskpassbackportsbase64encBHbigDbinombitbit64bitopsbroombslibcachemcardscellrangerclassclassIntclicliprcolorspacecommonmarkcpp11crayoncurldata.tableDBIdigestdplyre1071ellipsisepidictepikitepitabulateevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeignfsgdtoolsgenericsggalluvialggplot2ggspatialgluegtgtablegtsummaryhavenherehighrhmshtmltoolshtmlwidgetsisobandjanitorjpegjquerylibjsonlitejuicyjuiceKernSmoothknitrlabelinglabelledlatticelazyevallifecyclelubridatemagrittrmarkdownMASSmatchmakerMatrixmemoisemgcvmimeminqamitoolsmunsellnlmenumDerivofficeropensslpacmanparsedatepatchworkpillarpkgconfigpngprettyunitsprogressproxypurrrR.methodsS3R.ooR.utilsR6raggrappdirsRColorBrewerRcppRcppArmadilloreactablereactRreadrreadxlrematchremotesriorlangrmarkdownrosmrprojroots2sassscalessfslidersnakecasesrvyrstringistringrsurveysurvivalsyssystemfontstextshapingtibbletidyrtidyselecttimechangetinytextsibbletzdbunitsutf8uuidV8vctrsviridisLitevroomwarpwithrwkwritexlxfunxml2yamlzip

Readme and manuals

Help Manual

Help pageTopics
Exported functions from epikitadd_weights_cluster add_weights_strata age_categories assert_positive_timespan augment_redundant constrain_dates dots_to_charlist fac_from_num find_breaks find_date_cause find_end_date find_start_date fmt_ci fmt_ci_df fmt_count fmt_pci fmt_pci_df gen_polygon gen_population group_age_categories merge_ci_df merge_pci_df rename_redundant unite_ci zcurve
Functions re-exported from apyramidage_pyramid
Functions re-exported from epitabulateattack_rate
Display the available sitrep templatesavailable_sitrep_templates
Functions re-expored from epidictgen_data msf_dict msf_dict_rename_helper msf_dict_survey