Package: strataG Title: Summaries and Population Structure Analyses of Genetic Data Description: A toolkit for analyzing stratified population genetic data. Functions are provided for summarizing and checking loci (haploid, diploid, and polyploid), single stranded DNA sequences, calculating most population subdivision metrics, and running external programs such as structure and fastsimcoal. The package is further described in Archer et al (2016) . Version: 2.5.5 License: GNU General Public License Authors@R: c( EA = person("Eric", "Archer", email = "eric.ivan.archer@gmail.com", role = c("aut", "cre")), PA = person("Paula", "Adams", email = "peadams@crimson.ua.edu", role = c("aut")), BS = person("Brita", "Schneiders", email = "britaschneiders@u.northwestern.edu", role = c("aut")), SF = person("Sarina", "Fernandez", email = "sarinafernandez5@gmail.com", role = c("aut")), WA = person("Warren", "Asfazadour", email = "wasfazad@hotmail.com", role = c("aut"))) URL: https://github.com/EricArcher/strataG BugReports: https://github.com/EricArcher/strataG/issues Depends: R (>= 4.1.0) Suggests: knitr, rmarkdown, testthat, qgraph, rfPermute, rmetasim Imports: Rcpp (>= 1.0.5), ape (>= 5.4), apex (>= 1.0.4), adegenet (>= 2.1.3), dplyr (>= 1.0.2), tibble (>= 3.0.4), tidyr (>= 1.1.2), purrr (>= 0.3.4), data.table (>= 1.13.6), copula (> 1.0), genepop (>= 1.1.7), ggplot2 (>= 3.3.3), graphics, grid (>= 4.0.3), gridExtra (>= 2.3), methods, pegas (>= 0.14), phangorn (>= 2.5.5), rlang (>= 0.4.10), sprex (>= 1.4.2), stats, stringi (>= 1.5.3), swfscMisc (>= 1.4), utils Remotes: stranda/rmetasim Collate: strataG-package.R RcppExports.R gtypes.class.R gtypes.accessors.R is.gtypes.R gtypes.initialize.R strataG-internal.R as.data.frame.gtypes.R alleleFreqs.R alleleSplit.R allelicRichness.R as.multidna.R dupGenotypes.R heterozygosity.R labelHaplotypes.R numAlleles.R numGenotyped.R numMissing.R permuteStrata.R privateAlleles.R propUniqueAlleles.R readGenData.R removeUnusedSequences.R sharedLoci.R strataSplit.R stratify.R summarizeLoci.R summarizeInds.R summarizeSeqs.R gtypes.show.R gtypes.summary.R writeGtypes.R df2gtypes.R sequence2gtypes.R baseFreqs.R createConsensus.R iupac.R expandHaplotypes.R trimNs.R fasta.R fixedSites.R variableSites.R nucleotideDiversity.R fixedDifferences.R lowFreqSubs.R sequenceLikelihoods.R nucleotideDivergence.R popGenEqns.R freq2GenData.R gtypes2genind.R gtypes2genlight.R gtypes2loci.R gtypes2phyDat.R theta.R maf.R TiTvRatio.R simGammaHaps.R mostDistantSequences.R mostRepresentativeSequences.R write.nexus.snapp.R mega.R mRatio.R neiDa.R mafft.R arlequin.R ldNe.R genepop.R hweTest.R jackHWE.R LDgenepop.R fsc.input.R fscWrite.R fscRun.R fscRead.R sfs.R structure.R structurePlot.R evanno.R clumpp.R fusFs.R tajimasD.R popStructTest.R gelato.R phase.R maverickRun.R summarizeAll.R landscape2gtypes.R diagnosability.R microhaplot2rubias.R qual2prob.R zygosity.R gtypes2rfDF.R gtypesRF.R sequenceRF.R LazyData: TRUE VignetteBuilder: knitr LinkingTo: Rcpp, RcppArmadillo Encoding: UTF-8 RoxygenNote: 7.3.3 Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev libglpk-dev make libgsl0-dev libicu-dev libuv1-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev libudunits2-dev zlib1g-dev Repository: https://zkamvar.r-universe.dev Date/Publication: 2026-01-05 19:52:58 UTC RemoteUrl: https://github.com/EricArcher/strataG RemoteRef: HEAD RemoteSha: d25223781a05ae3306aed510dfdf3779417ab1c5 NeedsCompilation: yes Packaged: 2026-06-04 08:00:01 UTC; root Author: Eric Archer [aut, cre], Paula Adams [aut], Brita Schneiders [aut], Sarina Fernandez [aut], Warren Asfazadour [aut] Maintainer: Eric Archer