Package: repvar 0.1.0
repvar: Extract Samples to Represent All Variables
In population genetics, it's not uncommon to re-genotype sets of samples to use as positive controls in future studies or for diagnostic panels. To save cost, it's often desireable to have the minimum number of samples that represent all of the alleles in the data. This package provides a procedure that will select these samples with alternative options. The name 'repvar' stands for 'REPresent VARiables'.
Authors:
repvar_0.1.0.tar.gz
repvar_0.1.0.zip(r-4.5)repvar_0.1.0.zip(r-4.4)repvar_0.1.0.zip(r-4.3)
repvar_0.1.0.tgz(r-4.4-any)repvar_0.1.0.tgz(r-4.3-any)
repvar_0.1.0.tar.gz(r-4.5-noble)repvar_0.1.0.tar.gz(r-4.4-noble)
repvar_0.1.0.tgz(r-4.4-emscripten)repvar_0.1.0.tgz(r-4.3-emscripten)
repvar.pdf |repvar.html✨
repvar/json (API)
NEWS
# Install 'repvar' in R: |
install.packages('repvar', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zkamvar/repvar/issues
- monilinia - Peach brown rot pathogen _Monilinia fructicola_
Last updated 6 years agofrom:07e2051f16. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 31 2024 |
R-4.5-win | NOTE | Aug 31 2024 |
R-4.5-linux | NOTE | Aug 31 2024 |
R-4.4-win | NOTE | Aug 31 2024 |
R-4.4-mac | NOTE | Aug 31 2024 |
R-4.3-win | NOTE | Aug 31 2024 |
R-4.3-mac | NOTE | Aug 31 2024 |
Exports:rpv_findrpv_imagerpv_indicesrpv_stats
Dependencies:
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Peach brown rot pathogen _Monilinia fructicola_ | monilinia |
repvar. | repvar-package repvar |
Iteratively find minimum set of samples by shuffling rows | rpv_find |
Create an image of the data matrix | rpv_image |
Get minimum set of individual indices to represent all alleles in a population | rpv_indices |
Calculate Entropy Statistics | rpv_stats |