What the repvar package does | How it works | Functions in this package | Quickstart | Detailed Example: Monilinia fructicola
Package: repvar 0.1.1
repvar: Extract Samples to Represent All Variables
In population genetics, it's not uncommon to re-genotype sets of samples to use as positive controls in future studies or for diagnostic panels. To save cost, it's often desireable to have the minimum number of samples that represent all of the alleles in the data. This package provides a procedure that will select these samples with alternative options. The name 'repvar' stands for 'REPresent VARiables'.
Authors:
repvar_0.1.1.tar.gz
repvar_0.1.1.zip(r-4.7)repvar_0.1.1.zip(r-4.6)repvar_0.1.1.zip(r-4.5)
repvar_0.1.1.tgz(r-4.6-any)repvar_0.1.1.tgz(r-4.5-any)
repvar_0.1.1.tar.gz(r-4.7-any)repvar_0.1.1.tar.gz(r-4.6-any)
repvar_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
repvar/json (API)
| # Install 'repvar' in R: |
| install.packages('repvar', repos = c('https://zkamvar.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zkamvar/repvar/issues
Datasets:
- monilinia - Peach brown rot pathogen _Monilinia fructicola_
Last updated from:31180e285d. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 119 | ||
| source / vignettes | OK | 167 | ||
| linux-release-x86_64 | NOTE | 130 | ||
| macos-release-arm64 | NOTE | 77 | ||
| macos-oldrel-arm64 | NOTE | 107 | ||
| windows-devel | NOTE | 203 | ||
| windows-release | NOTE | 93 | ||
| windows-oldrel | NOTE | 78 | ||
| wasm-release | OK | 95 |
Exports:rpv_findrpv_imagerpv_indicesrpv_stats
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Peach brown rot pathogen _Monilinia fructicola_ | monilinia |
| repvar. | repvar-package repvar |
| Iteratively find minimum set of samples by shuffling rows | rpv_find |
| Create an image of the data matrix | rpv_image |
| Get minimum set of individual indices to represent all alleles in a population | rpv_indices |
| Calculate Entropy Statistics | rpv_stats |
